Transcript: ENST00000520837.1 TSPAN18-008

Description

tetraspanin 18 [Source:HGNC Symbol;Acc:20660]

Gene Synonyms

TSPAN

Location

Chromosome 11: 44,881,154-44,931,390 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 21127 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000157570.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340160.3	TSPAN18-201	4229	248aa	ENSP00000339820.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7910	E9PPB7 Q96SJ8	NM_130783.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520358.2	TSPAN18-001	3316	248aa	ENSP00000429993.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7910	E9PPB7 Q96SJ8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518429.2	TSPAN18-002	1184	271aa	ENSP00000429020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPB7 Q8WUV1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000520999.2	TSPAN18-009	871	157aa	ENSP00000427942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFP3 E5RFV0 E9PKD8 E9PPB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533080.1	TSPAN18-012	840	138aa	ENSP00000433362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533786.1	TSPAN18-010	726	146aa	ENSP00000433592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKD8 E9PPB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520837.1	TSPAN18-008	565	76aa	ENSP00000430343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533202.1	TSPAN18-011	549	79aa	ENSP00000434625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520245.1	TSPAN18-003	981	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000517621.1	TSPAN18-004	827	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520278.1	TSPAN18-006	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519051.1	TSPAN18-007	709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521990.1	TSPAN18-005	700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 565 bps, Translation length: 76 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000520837.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000376233 (version 1)

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Transcript: ENST00000520837.1 TSPAN18-008

Summary