Transcript: ENST00000459640.1 NECAP2-005

Description

NECAP endocytosis associated 2 [Source:HGNC Symbol;Acc:25528]

Gene Synonyms

FLJ10420

Location

Chromosome 1: 16,767,251-16,785,451 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 8237 variant alleles and maps to 302 oligo probes.

Gene

This transcript is a product of gene ENSG00000157191.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443980.2	NECAP2-008	1929	273aa	ENSP00000391942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44066	Q9NVZ3	NM_001145277.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337132.5	NECAP2-001	2070	263aa	ENSP00000338746.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS173	Q9NVZ3	NM_018090.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406746.1	NECAP2-201	1291	263aa	ENSP00000383925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS173	Q9NVZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457722.2	NECAP2-007	935	237aa	ENSP00000407091.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44067	Q9NVZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504551.2	NECAP2-012	768	202aa	ENSP00000424509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB24	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492095.1	NECAP2-002	1787	263aa	ENSP00000427620.1	Nonsense mediated decay	CCDS173	Q9NVZ3	-	-
ENST00000459640.1	NECAP2-005	981	194aa	ENSP00000421335.1	Nonsense mediated decay		F6SKB8	-	-
ENST00000504858.1	NECAP2-013	727	101aa	ENSP00000421867.1	Nonsense mediated decay		D6RAN6	-	-
ENST00000513161.1	NECAP2-011	713	63aa	ENSP00000423213.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486390.1	NECAP2-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508680.1	NECAP2-009	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496239.1	NECAP2-003	4619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509727.1	NECAP2-010	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 6, Transcript length: 981 bps, Translation length: 194 residues

Version

ENST00000459640.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006684 (version 3)

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Transcript: ENST00000459640.1 NECAP2-005

Summary