Transcript: ENST00000406746.1 NECAP2-201

Description

NECAP endocytosis associated 2 [Source:HGNC Symbol;Acc:25528]

Gene Synonyms

FLJ10420

Location

Chromosome 1: 16,767,219-16,786,572 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 8797 variant alleles and maps to 368 oligo probes.

Gene

This transcript is a product of gene ENSG00000157191.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443980.2	NECAP2-008	1929	273aa	ENSP00000391942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44066	Q9NVZ3	NM_001145277.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337132.5	NECAP2-001	2070	263aa	ENSP00000338746.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS173	Q9NVZ3	NM_018090.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406746.1	NECAP2-201	1291	263aa	ENSP00000383925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS173	Q9NVZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457722.2	NECAP2-007	935	237aa	ENSP00000407091.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44067	Q9NVZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504551.2	NECAP2-012	768	202aa	ENSP00000424509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB24	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492095.1	NECAP2-002	1787	263aa	ENSP00000427620.1	Nonsense mediated decay	CCDS173	Q9NVZ3	-	-
ENST00000459640.1	NECAP2-005	981	194aa	ENSP00000421335.1	Nonsense mediated decay		F6SKB8	-	-
ENST00000504858.1	NECAP2-013	727	101aa	ENSP00000421867.1	Nonsense mediated decay		D6RAN6	-	-
ENST00000513161.1	NECAP2-011	713	63aa	ENSP00000423213.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486390.1	NECAP2-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508680.1	NECAP2-009	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496239.1	NECAP2-003	4619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509727.1	NECAP2-010	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,291 bps, Translation length: 263 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NVZ3

CCDS

This transcript is a member of the Human CCDS set: CCDS173

Version

ENST00000406746.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000006681 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000406746.1 NECAP2-201

Summary