Description
SMG1 phosphatidylinositol 3-kinase-related kinase [Source:HGNC Symbol;Acc:30045]
Gene Synonyms
61E3.4, ATX, BOLA2A, KIAA0421, LIP, My016
Location
Chromosome 16: 18,816,175-18,937,776 reverse strand.
About this transcript
This transcript has 63 exons, is annotated with 40 domains and features, is associated with 59220 variant alleles and maps to 5373 oligo probes.
Gene
This transcript is a product of gene ENSG00000157106.12 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000446231.2 | SMG1-001 | 16115 | 3661aa | ENSP00000402515.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45430 | H3BPS6 Q96Q15 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000389467.3 | SMG1-201 | 16068 | 3662aa | ENSP00000374118.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BPS6 I3L0C1 | NM_015092.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000565324.1 | SMG1-005 | 12465 | 3551aa | ENSP00000456259.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRA9 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000563235.1 | SMG1-006 | 2910 | 853aa | ENSP00000455861.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000561947.1 | SMG1-004 | 2664 | 551aa | ENSP00000460854.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000565224.1 | SMG1-003 | 2372 | 607aa | ENSP00000458380.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PNP6 H3BPS6 H3BR09 I3L0W2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000532700.2 | SMG1-002 | 1259 | 335aa | ENSP00000432825.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PNP6 H3BPS6 H3BR09 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000563836.1 | SMG1-015 | 565 | 56aa | ENSP00000456025.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BR09 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000569122.1 | SMG1-013 | 562 | 62aa | ENSP00000455453.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BPS6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000568038.1 | SMG1-009 | 1210 | 321aa | ENSP00000458558.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000567737.1 | SMG1-014 | 721 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000566328.1 | SMG1-017 | 531 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000569764.1 | SMG1-010 | 4187 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000568239.1 | SMG1-007 | 2978 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000563448.1 | SMG1-012 | 2016 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000561940.1 | SMG1-016 | 964 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000562668.1 | SMG1-018 | 449 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |