Transcript: ENST00000424362.1 BRPF1-003

Description

bromodomain and PHD finger containing, 1 [Source:HGNC Symbol;Acc:14255]

Gene Synonyms

BR140

Location

Chromosome 3: 9,773,429-9,789,699 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 40 domains and features, is associated with 7857 variant alleles and maps to 544 oligo probes.

Gene

This transcript is a product of gene ENSG00000156983.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000383829.2	BRPF1-001	4736	1220aa	ENSP00000373340.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33692	C9JDK5 C9JHC0 P55201	NM_001003694.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424362.1	BRPF1-003	4712	1213aa	ENSP00000398863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDK5 C9JHC0 P55201	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302054.3	BRPF1-201	4710	1214aa	ENSP00000306297.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2575	C9JDK5 C9JHC0 P55201	NM_004634.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457855.1	BRPF1-004	4308	1214aa	ENSP00000410210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2575	C9JDK5 C9JHC0 P55201	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433861.2	BRPF1-002	4304	1119aa	ENSP00000402485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDK5 C9JHC0 P55201	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420291.1	BRPF1-005	860	100aa	ENSP00000416728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDK5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426583.1	BRPF1-006	534	105aa	ENSP00000404235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDK5 C9JHC0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000469066.1	BRPF1-008	431	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497565.1	BRPF1-007	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 4,712 bps, Translation length: 1,213 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55201

Version

ENST00000424362.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338484 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000424362.1 BRPF1-003

Summary