Transcript: ENST00000477324.2 XPC-008

Description

xeroderma pigmentosum, complementation group C [Source:HGNC Symbol;Acc:12816]

Gene Synonyms

RAD4, XP3, XPCC

Location

Chromosome 3: 14,200,307-14,208,767 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 3658 variant alleles and maps to 241 oligo probes.

Gene

This transcript is a product of gene ENSG00000154767.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000285021.7	XPC-001	3832	940aa	ENSP00000285021.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46763	D2CPI9 D2CPJ1 D2CPJ3 D2CPJ8 D2CPK1 D2CPK2 D2CPK4 Q01831	NM_004628.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449060.2	XPC-201	2712	903aa	ENSP00000404002.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46764	D2CPJ1 D2CPJ3 D2CPK2 D2CPK4 Q01831	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511155.1	XPC-007	557	168aa	ENSP00000423867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D2CPJ8 E7EUB5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476581.2	XPC-002	2944	140aa	ENSP00000424548.1	Nonsense mediated decay		D2CPJ8 E9PB96	-	-
ENST00000455144.2	XPC-005	958	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000427795.2	XPC-006	820	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000452172.1	XPC-004	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477324.2	XPC-008	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 554 bps,

Version

ENST00000477324.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000360243 (version 1)

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Transcript: ENST00000477324.2 XPC-008

Summary