Transcript: ENST00000505533.1 TMPRSS11D-002

Description

transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:24059]

Gene Synonyms

HAT

Location

Chromosome 4: 68,686,596-68,699,345 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5079 variant alleles and maps to 317 oligo probes.

Gene

This transcript is a product of gene ENSG00000153802.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283916.6	TMPRSS11D-001	2817	418aa	ENSP00000283916.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3518	B4DL57 O60235 Q4W5K4	NM_004262.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545541.1	TMPRSS11D-201	1592	301aa	ENSP00000442045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DL57	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514868.1	TMPRSS11D-007	194	65aa	ENSP00000421381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509584.1	TMPRSS11D-005	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502573.1	TMPRSS11D-004	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508409.1	TMPRSS11D-003	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511931.1	TMPRSS11D-008	512	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505533.1	TMPRSS11D-002	2448	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502822.1	TMPRSS11D-006	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,448 bps,

Version

ENST00000505533.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362254 (version 1)

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Transcript: ENST00000505533.1 TMPRSS11D-002

Summary