Transcript: ENST00000483842.1 PAN3-003

Description

PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29991]

Location

Chromosome 13: 28,813,694-28,830,676 forward strand.

About this transcript

This transcript has 2 exons, is associated with 7178 variant alleles and maps to 69 oligo probes.

Gene

This transcript is a product of gene ENSG00000152520.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380958.3	PAN3-002	2833	887aa	ENSP00000370345.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9329	Q58A45 Q6ZMN5	NM_175854.7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399613.1	PAN3-001	4940	687aa	ENSP00000382522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q58A45 Q6ZMN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282391.5	PAN3-201	4544	575aa	ENSP00000282391.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q58A45 Q6ZMN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483842.1	PAN3-003	729	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503791.1	PAN3-004	2443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 729 bps,

Version

ENST00000483842.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000276106 (version 1)

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Transcript: ENST00000483842.1 PAN3-003

Summary