Transcript: ENST00000494519.1 TCF7L1-002

Description

transcription factor 7-like 1 (T-cell specific, HMG-box) [Source:HGNC Symbol;Acc:11640]

Gene Synonyms

TCF-3, TCF3

Location

About this transcript

This transcript has 2 exons, is associated with 14066 variant alleles and maps to 72 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282111.3	TCF7L1-001	2968	588aa	ENSP00000282111.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1971	C9JPE3 Q53T87 Q9HCS4	NM_031283.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442813.1	TCF7L1-004	559	28aa	ENSP00000388984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPE3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494519.1	TCF7L1-002	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490744.1	TCF7L1-003	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 537 bps,

Version

ENST00000494519.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329003 (version 1)