Transcript: ENST00000461058.1 SCHIP1-011

Description

schwannomin interacting protein 1 [Source:HGNC Symbol;Acc:15678]

Gene Synonyms

SCHIP-1

Location

Chromosome 3: 159,557,727-159,604,165 forward strand.

About this transcript

This transcript has 3 exons, is associated with 17958 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSG00000151967.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000445224.2	SCHIP1-004	1645	244aa	ENSP00000404860.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56294	Q9P0W5	NM_001197109.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482804.1	SCHIP1-005	1799	260aa	ENSP00000419230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495954.1	SCHIP1-012	1000	52aa	ENSP00000420376.1	Nonsense mediated decay		F8WDG0	-	-
ENST00000483730.1	SCHIP1-013	806	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482885.1	SCHIP1-006	5949	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472483.1	SCHIP1-014	765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461058.1	SCHIP1-011	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475932.1	SCHIP1-015	213	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 566 bps,

Version

ENST00000461058.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352567 (version 1)

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Transcript: ENST00000461058.1 SCHIP1-011

Summary