Transcript: ENST00000341541.3 THYN1-002

Description

thymocyte nuclear protein 1 [Source:HGNC Symbol;Acc:29560]

Gene Synonyms

MDS012, MY105, THY28, THY28KD

Location

Chromosome 11: 134,118,173-134,123,238 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 2529 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000151500.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341541.3	THYN1-002	1299	225aa	ENSP00000341657.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8496	Q9P016	NM_014174.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392594.3	THYN1-004	943	225aa	ENSP00000376373.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8496	Q9P016	NM_199298.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392595.2	THYN1-005	893	225aa	ENSP00000376374.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8496	Q9P016	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352327.5	THYN1-001	835	166aa	ENSP00000341452.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8497	Q9P016	NM_199297.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525677.1	THYN1-006	377	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533975.1	THYN1-003	1074	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531135.1	THYN1-009	926	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533781.1	THYN1-008	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,299 bps, Translation length: 225 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P016

CCDS

This transcript is a member of the Human CCDS set: CCDS8496

Version

ENST00000341541.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393599 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000341541.3 THYN1-002

Summary