Transcript: ENST00000508553.1 FAM173B-005

Description

family with sequence similarity 173, member B [Source:HGNC Symbol;Acc:27029]

Gene Synonyms

JS-2, LOC134145

Location

Chromosome 5: 10,236,260-10,250,000 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 6407 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000150756.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000511437.1	FAM173B-001	1423	233aa	ENSP00000422338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43301	J3KN90 Q6P4H8	NM_199133.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000280330.8	FAM173B-003	1928	69aa	ENSP00000280330.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KN90	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510047.1	FAM173B-002	1160	216aa	ENSP00000420876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58942	Q6P4H8	NM_001258388.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506108.2	FAM173B-006	751	149aa	ENSP00000427453.1	Nonsense mediated decay		D6RIE0	-	-
ENST00000504390.1	FAM173B-004	571	109aa	ENSP00000424210.1	Nonsense mediated decay		D6RBE3	-	-
ENST00000510052.1	FAM173B-007	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508553.1	FAM173B-005	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 789 bps,

Version

ENST00000508553.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366052 (version 1)

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Transcript: ENST00000508553.1 FAM173B-005

Summary