Transcript: ENST00000438375.2 GRIK4-003

Description

glutamate receptor, ionotropic, kainate 4 [Source:HGNC Symbol;Acc:4582]

Gene Synonyms

EAA1, GRIK, GluK4, KA1

Location

Chromosome 11: 120,435,143-120,857,970 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 28 domains and features, is associated with 177346 variant alleles and maps to 767 oligo probes.

Gene

This transcript is a product of gene ENSG00000149403.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000527524.2	GRIK4-001	5802	956aa	ENSP00000435648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8433	Q16099	NM_001282470.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438375.2	GRIK4-003	4214	956aa	ENSP00000404063.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8433	Q16099	NM_014619.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527130.1	GRIK4-006	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526536.1	GRIK4-004	508	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533291.1	GRIK4-002	2961	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530172.1	GRIK4-007	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 4,214 bps, Translation length: 956 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16099

CCDS

This transcript is a member of the Human CCDS set: CCDS8433

Version

ENST00000438375.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387795 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000438375.2 GRIK4-003

Summary