Transcript: ENST00000396005.3 SLC5A12-001

Description

solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 [Source:HGNC Symbol;Acc:28750]

Gene Synonyms

MGC52019, SMCT2

Location

About this transcript

This transcript has 15 exons, is annotated with 20 domains and features, is associated with 24477 variant alleles and maps to 677 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396005.3	SLC5A12-001	6250	618aa	ENSP00000379326.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7860	E9PLZ7 Q1EHB4	NM_178498.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000280467.6	SLC5A12-002	2269	396aa	ENSP00000280467.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLZ7 Q1EHB4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533617.1	SLC5A12-004	814	150aa	ENSP00000435053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527405.1	SLC5A12-005	1932	277aa	ENSP00000436011.1	Nonsense mediated decay		E9PLZ7 G3V1E3 Q8IUS7	-	-
ENST00000528822.1	SLC5A12-006	1095	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 6,250 bps, Translation length: 618 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q1EHB4

CCDS

This transcript is a member of the Human CCDS set: CCDS7860

Version

ENST00000396005.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319681 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.