Transcript: ENST00000488068.1 EPHA1-002

Description

EPH receptor A1 [Source:HGNC Symbol;Acc:3385]

Gene Synonyms

EPH, EPHT, EPHT1

Location

Chromosome 7: 143,088,504-143,105,898 reverse strand.

About this transcript

This transcript has 16 exons, is associated with 8373 variant alleles and maps to 570 oligo probes.

Gene

This transcript is a product of gene ENSG00000146904.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000275815.3	EPHA1-001	3363	976aa	ENSP00000275815.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5884	P21709	NM_005232.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458129.1	EPHA1-008	651	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488068.1	EPHA1-002	2922	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497891.1	EPHA1-003	820	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494989.1	EPHA1-005	753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465208.1	EPHA1-006	686	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479459.1	EPHA1-004	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 0, Transcript length: 2,922 bps,

Version

ENST00000488068.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342155 (version 2)

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Transcript: ENST00000488068.1 EPHA1-002

Summary