Transcript: ENST00000354241.5 TRIM4-005

Description

tripartite motif containing 4 [Source:HGNC Symbol;Acc:16275]

Gene Synonyms

RNF87

Location

Chromosome 7: 99,498,789-99,517,116 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 7690 variant alleles and maps to 269 oligo probes.

Gene

This transcript is a product of gene ENSG00000146833.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355947.2	TRIM4-004	3383	500aa	ENSP00000348216.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5679	B4DEC5 Q9C037	NM_033017.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349062.2	TRIM4-001	3374	474aa	ENSP00000275736.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5678	B4DEC5 Q9C037	NM_033091.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354241.5	TRIM4-005	1942	294aa	ENSP00000346186.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C037	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447480.1	TRIM4-002	639	202aa	ENSP00000396229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496896.1	TRIM4-003	601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,942 bps, Translation length: 294 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9C037

Version

ENST00000354241.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000345051 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000354241.5 TRIM4-005

Summary