Transcript: ENST00000419037.1 C7orf43-004

Description

chromosome 7 open reading frame 43 [Source:HGNC Symbol;Acc:25604]

Gene Synonyms

FLJ10925

Location

Chromosome 7: 99,752,043-99,756,282 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 2416 variant alleles and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSG00000146826.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316937.3	C7orf43-001	2520	580aa	ENSP00000324741.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5687	B3KNS5 C9JMZ9 F8WFE0 Q8WVR3	NM_018275.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456769.1	C7orf43-008	2046	486aa	ENSP00000389672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNS5 C9JMZ9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000457641.1	C7orf43-010	2005	311aa	ENSP00000396432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNS5 C9JMZ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419841.1	C7orf43-005	1500	348aa	ENSP00000406326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNS5 C9JMZ9 E9PFF9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394035.2	C7orf43-007	1255	156aa	ENSP00000377600.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMZ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419037.1	C7orf43-004	2200	169aa	ENSP00000399397.1	Nonsense mediated decay		F8WFE0	-	-
ENST00000448720.1	C7orf43-006	1616	150aa	ENSP00000400075.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000498638.1	C7orf43-012	626	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472061.1	C7orf43-011	356	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470260.1	C7orf43-014	1103	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 3, Transcript length: 2,200 bps, Translation length: 169 residues

Version

ENST00000419037.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000337409 (version 1)

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Transcript: ENST00000419037.1 C7orf43-004

Summary