Transcript: ENST00000520209.1 RASGEF1C-004

Description

RasGEF domain family, member 1C [Source:HGNC Symbol;Acc:27400]

Gene Synonyms

FLJ35841

Location

Chromosome 5: 179,527,811-179,563,578 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 9 domains and features, is associated with 17846 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000146090.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393371.2	RASGEF1C-001	2395	466aa	ENSP00000377037.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4452	Q8N431	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361132.4	RASGEF1C-002	2239	466aa	ENSP00000354963.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4452	Q8N431	NM_175062.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522500.1	RASGEF1C-003	2055	315aa	ENSP00000429114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N431	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520209.1	RASGEF1C-004	1892	238aa	ENSP00000430659.1	Nonsense mediated decay		I6L9E5	-	-
ENST00000519883.1	RASGEF1C-005	595	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519456.1	RASGEF1C-006	520	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 1,892 bps, Translation length: 238 residues

Version

ENST00000520209.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000373858 (version 1)

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Transcript: ENST00000520209.1 RASGEF1C-004

Summary