Transcript: ENST00000471307.2 CCDC39-003

Description

coiled-coil domain containing 39 [Source:HGNC Symbol;Acc:25244]

Gene Synonyms

CILD14, DKFZp434A128, FAP59

Location

Chromosome 3: 180,379,660-180,588,721 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 86990 variant alleles and maps to 190 oligo probes.

Gene

This transcript is a product of gene ENSG00000145075.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000442201.2	CCDC39-001	3279	941aa	ENSP00000405708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46964	Q9UFE4	NM_181426.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273654.4	CCDC39-201	4450	755aa	ENSP00000273654.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WBW2 Q9UFE4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471307.2	CCDC39-003	783	97aa	ENSP00000418702.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489868.1	CCDC39-007	534	67aa	ENSP00000420025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5I6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473854.1	CCDC39-006	487	102aa	ENSP00000418482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476379.1	CCDC39-002	4451	671aa	ENSP00000417960.1	Nonsense mediated decay		F8WBW2	-	-
ENST00000485055.1	CCDC39-004	2874	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495817.1	CCDC39-005	1047	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 783 bps, Translation length: 97 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000471307.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000349889 (version 2)

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Transcript: ENST00000471307.2 CCDC39-003

Summary