Transcript: ENST00000465630.1 UBR3-006

Description

ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]

Gene Synonyms

DKFZp434P117, FLJ37422, KIAA2024, ZNF650

Location

Chromosome 2: 170,870,550-170,885,945 forward strand.

About this transcript

This transcript has 3 exons, is associated with 6013 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSG00000144357.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000418381.1	UBR3-202	7951	1888aa	ENSP00000396068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2238	Q68DC1 Q6ZT12	NM_172070.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000272793.5	UBR3-001	8005	1888aa	ENSP00000272793.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68DC1 Q6ZT12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392632.2	UBR3-008	5129	950aa	ENSP00000376409.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68DC1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000392631.1	UBR3-201	4414	709aa	ENSP00000376408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZT12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439681.1	UBR3-007	2183	588aa	ENSP00000389097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZD8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000430321.1	UBR3-003	5411	384aa	ENSP00000415982.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000444475.1	UBR3-005	3821	77aa	ENSP00000408436.1	Nonsense mediated decay		F8WEB7	-	-
ENST00000465630.1	UBR3-006	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474426.1	UBR3-004	4066	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484596.1	UBR3-011	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487689.1	UBR3-010	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477461.1	UBR3-009	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 576 bps,

Version

ENST00000465630.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323263 (version 1)

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Transcript: ENST00000465630.1 UBR3-006

Summary