Transcript: ENST00000472720.1 THSD7B-002

Description

thrombospondin, type I, domain containing 7B [Source:HGNC Symbol;Acc:29348]

Gene Synonyms

KIAA1679

Location

Chromosome 2: 137,523,115-137,814,085 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 127188 variant alleles and maps to 105 oligo probes.

Gene

This transcript is a product of gene ENSG00000144229.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000272643.3	THSD7B-201	5942	1609aa	ENSP00000272643.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9C0I4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409968.1	THSD7B-001	6111	1606aa	ENSP00000387145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EM75	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413152.2	THSD7B-202	5849	1578aa	ENSP00000413841.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JKN6	NM_001080427.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543459.1	THSD7B-203	1002	333aa	ENSP00000443370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B4DSV0 F5H5I9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472720.1	THSD7B-002	532	50aa	ENSP00000473349.1	Nonsense mediated decay	R4GMU2	-	-
ENST00000485379.1	THSD7B-003	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000480352.1	THSD7B-004	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 532 bps, Translation length: 50 residues

Version

ENST00000472720.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331793 (version 2)

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Transcript: ENST00000472720.1 THSD7B-002

Summary