Transcript: ENST00000565636.1 CDH13-004

Description

cadherin 13 [Source:HGNC Symbol;Acc:1753]

Gene Synonyms

CDHH, P105

Location

Chromosome 16: 82,660,575-83,214,630 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 367555 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSG00000140945.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268613.10	CDH13-009	2722	760aa	ENSP00000268613.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58485	P55290	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566620.1	CDH13-001	4001	713aa	ENSP00000454435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58486	F5H7W7 P55290	NM_001257.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428848.3	CDH13-005	2195	674aa	ENSP00000394557.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58487	B7Z590 F5H7W7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567445.1	CDH13-007	1456	67aa	ENSP00000456297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7W7 H3BRL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431540.3	CDH13-003	831	190aa	ENSP00000408632.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56010	F5H7W7 P55290	NM_001220491.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565636.1	CDH13-004	810	175aa	ENSP00000456491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56009	F5H7W7 P55290	NM_001220492.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446376.2	CDH13-201	528	175aa	ENSP00000388804.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56009	F5H7W7 P55290	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539548.2	CDH13-006	2199	52aa	ENSP00000442225.2	Nonsense mediated decay		F5H7W7	-	-
ENST00000568770.1	CDH13-013	589	37aa	ENSP00000457149.1	Nonsense mediated decay		H3BTF2	-	-
ENST00000569144.1	CDH13-012	583	56aa	ENSP00000457914.1	Nonsense mediated decay		F5H7W7 H3BV21	-	-
ENST00000562601.1	CDH13-011	545	67aa	ENSP00000455781.1	Nonsense mediated decay		H3BQH4	-	-
ENST00000569454.1	CDH13-015	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562307.1	CDH13-016	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569455.1	CDH13-010	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566333.1	CDH13-014	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 810 bps, Translation length: 175 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55290

CCDS

This transcript is a member of the Human CCDS set: CCDS56009

Version

ENST00000565636.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432923 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000565636.1 CDH13-004

Summary