Description
high mobility group 20A [Source:HGNC Symbol;Acc:5001]
Gene Synonyms
FLJ10739, HMGX1, HMGXB1
Location
Chromosome 15: 77,750,559-77,763,288 forward strand.
About this transcript
This transcript has 5 exons, is annotated with 9 domains and features, is associated with 5021 variant alleles and maps to 131 oligo probes.
Gene
This transcript is a product of gene ENSG00000140382.10 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000381714.3 | HMG20A-002 | 4112 | 347aa | ENSP00000371133.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10295 | B4DMG1 H0YK55 H0YKM5 H0YM80 H0YMS9 H0YNS8 Q9NP66 | NM_018200.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000336216.4 | HMG20A-001 | 4046 | 347aa | ENSP00000336856.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10295 | B4DMG1 H0YK55 H0YKM5 H0YM80 H0YMS9 H0YNS8 Q9NP66 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000558845.1 | HMG20A-009 | 644 | 118aa | ENSP00000452847.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000560498.1 | HMG20A-007 | 631 | 100aa | ENSP00000453498.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YM80 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000560867.1 | HMG20A-013 | 559 | 162aa | ENSP00000452864.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YK55 H0YKM5 H0YM80 H0YMS9 H0YNS8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000559099.1 | HMG20A-015 | 558 | 156aa | ENSP00000454136.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YK55 H0YM80 H0YMS9 H0YNS8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000558651.1 | HMG20A-012 | 494 | 29aa | ENSP00000453727.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YK55 H0YMS9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000558176.1 | HMG20A-011 | 479 | 26aa | ENSP00000452665.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YK55 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000559035.1 | HMG20A-014 | 563 | 84aa | ENSP00000453592.1 | Nonsense mediated decay | H0YMG2 | - | - | |
| ENST00000558288.1 | HMG20A-006 | 3558 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000559728.1 | HMG20A-008 | 981 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000560986.1 | HMG20A-010 | 747 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |