Transcript: ENST00000546974.1 COL2A1-009

Description

collagen, type II, alpha 1 [Source:HGNC Symbol;Acc:2200]

Gene Synonyms

ANFH, AOM, COL11A3, SEDC, STL1

Location

Chromosome 12: 48,369,136-48,371,228 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 1298 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000139219.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380518.3	COL2A1-001	5071	1487aa	ENSP00000369889.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41778	P02458	NM_033150.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337299.6	COL2A1-008	4257	1418aa	ENSP00000338213.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8759	P02458	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493991.1	COL2A1-007	3756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474996.2	COL2A1-002	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465743.2	COL2A1-005	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466884.1	COL2A1-004	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546974.1	COL2A1-009	703	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490609.1	COL2A1-003	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483376.1	COL2A1-006	641	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 703 bps,

Version

ENST00000546974.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406463 (version 1)

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Transcript: ENST00000546974.1 COL2A1-009

Summary