Transcript: ENST00000497911.2 SLCO1C1-009

Description

solute carrier organic anion transporter family, member 1C1 [Source:HGNC Symbol;Acc:13819]

Gene Synonyms

OATP-F, OATP1, OATP14, OATP1C1, OATPF, OATPRP5, SLC21A14

Location

Chromosome 12: 20,848,495-20,853,173 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1985 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSG00000139155.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381552.1	SLCO1C1-201	3466	730aa	ENSP00000370964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53757	Q9NYB5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545604.1	SLCO1C1-202	3453	730aa	ENSP00000444149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53757	Q9NYB5	NM_001145946.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266509.2	SLCO1C1-001	3365	712aa	ENSP00000266509.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8683	Q9NYB5	NM_017435.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545102.1	SLCO1C1-004	2868	612aa	ENSP00000444527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53759	Q9NYB5	NM_001145944.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540354.1	SLCO1C1-002	2529	663aa	ENSP00000438665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53758	Q9NYB5	NM_001145945.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539415.1	SLCO1C1-003	2414	46aa	ENSP00000437399.1	Nonsense mediated decay		F5H6S4	-	-
ENST00000535609.1	SLCO1C1-007	780	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534996.1	SLCO1C1-006	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000539443.1	SLCO1C1-008	171	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497911.2	SLCO1C1-009	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 812 bps,

Version

ENST00000497911.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000401766 (version 1)

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Transcript: ENST00000497911.2 SLCO1C1-009

Summary