Transcript: ENST00000322843.3 B4GALNT3-008

Description

beta-1,4-N-acetyl-galactosaminyl transferase 3 [Source:HGNC Symbol;Acc:24137]

Gene Synonyms

B4GalNac-T3, FLJ16224, FLJ40362

Location

Chromosome 12: 652,299-664,596 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 6 domains and features, is associated with 7338 variant alleles and maps to 331 oligo probes.

Gene

This transcript is a product of gene ENSG00000139044.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000266383.5	B4GALNT3-001	5068	998aa	ENSP00000266383.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8504	Q6L9W6	NM_173593.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322843.3	B4GALNT3-008	1926	636aa	ENSP00000322953.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHD9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544638.1	B4GALNT3-007	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535402.1	B4GALNT3-006	4590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535680.1	B4GALNT3-002	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540836.1	B4GALNT3-005	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,926 bps, Translation length: 636 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000322843.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398134 (version 1)

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Transcript: ENST00000322843.3 B4GALNT3-008

Summary