Transcript: ENST00000509994.1 SCARB2-003

Description

scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:1665]

Gene Synonyms

AMRF, CD36L2, EPM4, HLGP85, LGP85, LIMP-2, LIMP2, LIMPII, SR-BII

Location

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features, is associated with 12790 variant alleles and maps to 119 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264896.2	SCARB2-001	4763	478aa	ENSP00000264896.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3577	Q14108	NM_005506.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452464.2	SCARB2-002	1495	335aa	ENSP00000399154.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56335	Q14108	NM_001204255.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509994.1	SCARB2-003	544	106aa	ENSP00000420988.1	Nonsense mediated decay		D6RDG0	-	-
ENST00000511129.1	SCARB2-005	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502908.1	SCARB2-004	506	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 544 bps, Translation length: 106 residues

Version

ENST00000509994.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362703 (version 1)