Transcript: ENST00000532388.1 SLCO5A1-003

Description

solute carrier organic anion transporter family, member 5A1 [Source:HGNC Symbol;Acc:19046]

Gene Synonyms

OATP-J, OATP-RP4, OATP5A1, OATPRP4, SLC21A15

Location

Chromosome 8: 70,617,127-70,746,244 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 54956 variant alleles and maps to 200 oligo probes.

Gene

This transcript is a product of gene ENSG00000137571.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000260126.4	SLCO5A1-001	9076	848aa	ENSP00000260126.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6205	Q9H2Y9	NM_030958.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524945.1	SLCO5A1-004	3725	687aa	ENSP00000434422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55243	Q9H2Y9	NM_001146008.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530307.1	SLCO5A1-006	2630	793aa	ENSP00000431611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55242	B4DR09 Q9H2Y9	NM_001146009.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526750.1	SLCO5A1-005	2650	312aa	ENSP00000432676.1	Nonsense mediated decay		E9PPI0	-	-
ENST00000528658.1	SLCO5A1-002	1777	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531422.1	SLCO5A1-008	610	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524703.1	SLCO5A1-007	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532388.1	SLCO5A1-003	2261	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,261 bps,

Version

ENST00000532388.1

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000381994 (version 1)

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Transcript: ENST00000532388.1 SLCO5A1-003

Summary