Transcript: ENST00000375117.4 C9orf156-002

Description

chromosome 9 open reading frame 156 [Source:HGNC Symbol;Acc:30967]

Gene Synonyms

HSPC219, NAP1

Location

Chromosome 9: 100,672,565-100,684,772 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 5644 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSG00000136932.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375119.3	C9orf156-001	1647	441aa	ENSP00000364260.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6730	Q5T114 Q9BU70	NM_016481.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375118.1	C9orf156-005	2971	295aa	ENSP00000364259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T114	-	-
ENST00000375117.4	C9orf156-002	843	159aa	ENSP00000364258.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T112	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000455506.1	C9orf156-006	552	172aa	ENSP00000408473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T111	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478126.1	C9orf156-004	841	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471580.1	C9orf156-003	426	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 843 bps, Translation length: 159 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000375117.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055402 (version 1)

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Transcript: ENST00000375117.4 C9orf156-002

Summary