Transcript: ENST00000579028.1 BRIP1-005

Description

BRCA1 interacting protein C-terminal helicase 1 [Source:HGNC Symbol;Acc:20473]

Gene Synonyms

BACH1, FANCJ, OF

Location

Chromosome 17: 59,853,762-59,871,034 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 9109 variant alleles and maps to 100 oligo probes.

Gene

This transcript is a product of gene ENSG00000136492.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000259008.2	BRIP1-001	6048	1249aa	ENSP00000259008.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11631	J3KS24 Q9BX63	NM_032043.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577598.1	BRIP1-002	3969	994aa	ENSP00000464654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS24 J3QSE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584322.1	BRIP1-006	716	180aa	ENSP00000463272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577913.1	BRIP1-003	466	69aa	ENSP00000462274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS24	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579028.1	BRIP1-005	790	84aa	ENSP00000463827.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583837.1	BRIP1-004	449	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 790 bps, Translation length: 84 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000579028.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000445366 (version 1)

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Transcript: ENST00000579028.1 BRIP1-005

Summary