Transcript: ENST00000549335.1 ALDH1L2-003

Description

aldehyde dehydrogenase 1 family, member L2 [Source:HGNC Symbol;Acc:26777]

Gene Synonyms

FLJ38508, mtFDH

Location

Chromosome 12: 105,413,568-105,460,383 reverse strand.

About this transcript

This transcript has 19 exons, is associated with 20315 variant alleles and maps to 840 oligo probes.

Gene

This transcript is a product of gene ENSG00000136010.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258494.9	ALDH1L2-001	7547	923aa	ENSP00000258494.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31891	Q3SY69	NM_001034173.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424857.2	ALDH1L2-201	1678	516aa	ENSP00000389608.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3SY69	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548418.1	ALDH1L2-005	527	92aa	ENSP00000447464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552270.1	ALDH1L2-002	2746	203aa	ENSP00000447538.1	Nonsense mediated decay		Q3SY69	-	-
ENST00000549335.1	ALDH1L2-003	7397	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552427.1	ALDH1L2-004	486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 0, Transcript length: 7,397 bps,

Version

ENST00000549335.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406097 (version 1)

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Transcript: ENST00000549335.1 ALDH1L2-003

Summary