Transcript: ENST00000490728.1 ARHGEF4-006

Description

Rho guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:684]

Gene Synonyms

ASEF, ASEF1, GEF4, KIAA1112, STM6

Location

Chromosome 2: 131,797,102-131,804,826 forward strand.

About this transcript

This transcript has 7 exons, is associated with 4205 variant alleles and maps to 492 oligo probes.

Gene

This transcript is a product of gene ENSG00000136002.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326016.5	ARHGEF4-001	3656	690aa	ENSP00000316845.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2165	Q53QF2 Q53TH6 Q9NR80 Q9NTG0	NM_015320.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409359.1	ARHGEF4-003	4788	1014aa	ENSP00000386794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV07 Q53QF2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392953.3	ARHGEF4-201	4257	670aa	ENSP00000376680.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42754	Q53QF2 Q9NR80	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525839.1	ARHGEF4-002	3800	670aa	ENSP00000432267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42754	Q53QF2 Q9NR80	NM_032995.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409303.1	ARHGEF4-005	1893	630aa	ENSP00000387285.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEM0 Q53QF2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355771.3	ARHGEF4-009	1872	619aa	ENSP00000348017.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53TH6 Q9NR80 Q9NTG0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438985.1	ARHGEF4-004	1638	372aa	ENSP00000389661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4QPB6 H0Y451 Q53QF2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000428230.2	ARHGEF4-202	1638	192aa	ENSP00000398455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4QPB6 Q53QF2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532720.1	ARHGEF4-012	882	287aa	ENSP00000432301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000439368.2	ARHGEF4-010	901	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496764.2	ARHGEF4-007	840	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528247.1	ARHGEF4-011	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526381.1	ARHGEF4-008	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490728.1	ARHGEF4-006	3229	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525092.1	ARHGEF4-014	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527365.1	ARHGEF4-013	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 3,229 bps,

Version

ENST00000490728.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331310 (version 1)

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Transcript: ENST00000490728.1 ARHGEF4-006

Summary