Transcript: ENST00000522593.1 HAVCR2-004

Description

hepatitis A virus cellular receptor 2 [Source:HGNC Symbol;Acc:18437]

Gene Synonyms

FLJ14428, HAVcr-2, KIM-3, TIM3, TIMD-3, TIMD3, Tim-3

Location

Chromosome 5: 156,514,099-156,536,133 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 9979 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSG00000135077.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307851.4	HAVCR2-001	2907	301aa	ENSP00000312002.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4333	E5RFR4 Q8TDQ0	NM_032782.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522593.1	HAVCR2-004	975	273aa	ENSP00000430873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHN3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524219.1	HAVCR2-007	566	74aa	ENSP00000430328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFR4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517358.1	HAVCR2-005	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522902.1	HAVCR2-002	1010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521665.1	HAVCR2-006	795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 975 bps, Translation length: 273 residues

Version

ENST00000522593.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373703 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000522593.1 HAVCR2-004

Summary