Transcript: ENST00000370022.5 PRPF38B-004

Description

pre-mRNA processing factor 38B [Source:HGNC Symbol;Acc:25512]

Gene Synonyms

FLJ10330, NET1, RP11-293A10.1

Location

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 2488 variant alleles and maps to 301 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370025.4	PRPF38B-001	3693	546aa	ENSP00000359042.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS788	Q5VTL8	NM_018061.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370021.1	PRPF38B-002	3728	435aa	ENSP00000359038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370022.5	PRPF38B-004	1591	190aa	ENSP00000359039.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VTL8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467302.1	PRPF38B-003	2043	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485810.1	PRPF38B-005	1352	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,591 bps, Translation length: 190 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VTL8

Version

ENST00000370022.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000030234 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.