Transcript: ENST00000329117.5 BCAN-001

Description

brevican [Source:HGNC Symbol;Acc:23059]

Gene Synonyms

BEHAB, CSPG7, MGC13038

Location

Chromosome 1: 156,611,740-156,629,320 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 48 domains and features, is associated with 8871 variant alleles and maps to 676 oligo probes.

Gene

This transcript is a product of gene ENSG00000132692.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329117.5	BCAN-001	3466	911aa	ENSP00000331210.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1149	Q59F90 Q5T3I7 Q5T3I8 Q96GW7 Q9NT67	NM_021948.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361588.5	BCAN-002	2563	671aa	ENSP00000354925.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1150	Q5T3I7 Q5T3I8 Q96GW7	NM_198427.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424639.1	BCAN-006	844	231aa	ENSP00000401709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T3I6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457777.2	BCAN-007	807	213aa	ENSP00000389898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T3I7 Q5T3I8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441358.1	BCAN-008	600	145aa	ENSP00000392731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T3I8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479949.1	BCAN-004	1705	196aa	ENSP00000476509.1	Nonsense mediated decay		Q5T3I8	-	-
ENST00000491823.1	BCAN-005	790	26aa	ENSP00000476259.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496038.1	BCAN-003	1871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 3,466 bps, Translation length: 911 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96GW7

CCDS

This transcript is a member of the Human CCDS set: CCDS1149

Version

ENST00000329117.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000081844 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000329117.5 BCAN-001

Summary