Transcript: ENST00000491417.1 PER2-005

Description

period circadian clock 2 [Source:HGNC Symbol;Acc:8846]

Gene Synonyms

FASPS, FASPS1, KIAA0347

Location

Chromosome 2: 239,170,082-239,171,616 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 725 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000132326.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254657.3	PER2-001	6385	1255aa	ENSP00000254657.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2528	E9PD89 O15055 Q6DT41	NM_022817.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000254658.3	PER2-201	6235	404aa	ENSP00000254658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PD89 O15055 Q6DT41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440245.1	PER2-202	1826	483aa	ENSP00000397516.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PD89 F5GYD5 Q6DT41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355768.2	PER2-002	1228	404aa	ENSP00000348013.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PD89 O15055 Q6DT41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431832.1	PER2-004	551	109aa	ENSP00000405891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PD89 Q6DT41	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491417.1	PER2-005	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 575 bps,

Version

ENST00000491417.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328357 (version 1)

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Transcript: ENST00000491417.1 PER2-005

Summary