Transcript: ENST00000519656.1 EFR3A-002

Description

EFR3 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:28970]

Gene Synonyms

KIAA0143

Location

Chromosome 8: 132,952,148-133,025,889 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 5 domains and features, is associated with 31947 variant alleles and maps to 703 oligo probes.

Gene

This transcript is a product of gene ENSG00000132294.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254624.5	EFR3A-001	5438	821aa	ENSP00000254624.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34942	B4DZ89 E5RJS1 Q14156	NM_015137.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519656.1	EFR3A-002	5247	785aa	ENSP00000428086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZ89 E5RJS1 Q14156	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334503.4	EFR3A-201	4776	821aa	ENSP00000334769.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZ89 E5RJS1 H9KV44	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522709.1	EFR3A-003	780	133aa	ENSP00000430512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJS1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520362.1	EFR3A-004	477	13aa	ENSP00000428844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521940.1	EFR3A-006	804	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519920.1	EFR3A-007	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523074.1	EFR3A-005	831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 21, Transcript length: 5,247 bps, Translation length: 785 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14156

Version

ENST00000519656.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000380050 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000519656.1 EFR3A-002

Summary