Transcript: ENST00000538888.1 C12orf65-008

Description

chromosome 12 open reading frame 65 [Source:HGNC Symbol;Acc:26784]

Gene Synonyms

COXPD7, FLJ38663, SPG55

Location

Chromosome 12: 123,717,984-123,741,438 forward strand.

About this transcript

This transcript has 3 exons, is associated with 10912 variant alleles and maps to 292 oligo probes.

Gene

This transcript is a product of gene ENSG00000130921.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253233.1	C12orf65-001	2073	166aa	ENSP00000253233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9244	F5H4X5 F5H5V8 Q9H3J6	NM_152269.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543139.1	C12orf65-003	3733	138aa	ENSP00000444843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4X5 F5H5V8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000366329.2	C12orf65-201	1575	166aa	ENSP00000390647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9244	F5H4X5 F5H5V8 Q9H3J6	NM_001143905.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429587.2	C12orf65-007	1326	166aa	ENSP00000391513.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9244	F5H4X5 F5H5V8 Q9H3J6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536130.1	C12orf65-005	604	36aa	ENSP00000443072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5V8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546132.1	C12orf65-006	573	96aa	ENSP00000441796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWJ6 F5H5V8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425637.2	C12orf65-002	1632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000538888.1	C12orf65-008	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 727 bps,

Version

ENST00000538888.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000401376 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000538888.1 C12orf65-008

Summary