Transcript: ENST00000413787.1 SLC6A8-008

Description

solute carrier family 6 (neurotransmitter transporter), member 8 [Source:HGNC Symbol;Acc:11055]

Gene Synonyms

CCDS1, CRT, CRTR, CT1

Location

Chromosome X: 152,958,509-152,960,031 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 943 variant alleles and maps to 582 oligo probes.

Gene

This transcript is a product of gene ENSG00000130821.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253122.5	SLC6A8-002	3763	635aa	ENSP00000253122.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14726	P48029	NM_005629.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430077.2	SLC6A8-005	1892	520aa	ENSP00000403041.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48190	P48029	NM_001142806.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442457.1	SLC6A8-009	523	174aa	ENSP00000403682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000413787.1	SLC6A8-008	468	156aa	ENSP00000400463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1I2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000429147.1	SLC6A8-006	334	112aa	ENSP00000404046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000457723.1	SLC6A8-001	266	88aa	ENSP00000394742.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0F5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000485324.1	SLC6A8-003	2401	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466243.1	SLC6A8-010	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476466.1	SLC6A8-004	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467402.1	SLC6A8-007	308	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 468 bps, Translation length: 156 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000413787.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000061009 (version 1)

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Transcript: ENST00000413787.1 SLC6A8-008

Summary