Transcript: ENST00000252999.3 LAMA5-001

Description

laminin, alpha 5 [Source:HGNC Symbol;Acc:6485]

Gene Synonyms

KIAA0533, KIAA1907

Location

Chromosome 20: 60,884,121-60,942,368 reverse strand.

About this transcript

This transcript has 80 exons, is annotated with 212 domains and features, is associated with 40024 variant alleles and maps to 2034 oligo probes.

Gene

This transcript is a product of gene ENSG00000130702.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252999.3	LAMA5-001	11426	3695aa	ENSP00000252999.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33502	O15230 O75079	NM_005560.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370692.3	LAMA5-201	1943	528aa	ENSP00000359726.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E2QRK0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370677.3	LAMA5-003	1674	500aa	ENSP00000359711.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JTP4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370691.2	LAMA5-005	3160	670aa	ENSP00000433260.1	Nonsense mediated decay		F2Z2S4	-	-
ENST00000474128.1	LAMA5-007	579	38aa	ENSP00000420069.1	Nonsense mediated decay		H7C5J6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000492698.1	LAMA5-013	894	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497053.1	LAMA5-004	723	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497363.1	LAMA5-008	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495695.1	LAMA5-014	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491036.1	LAMA5-006	728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464134.1	LAMA5-002	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462415.1	LAMA5-011	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471042.1	LAMA5-010	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481120.1	LAMA5-009	386	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468786.1	LAMA5-012	325	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 80, Coding exons: 80, Transcript length: 11,426 bps, Translation length: 3,695 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15230

CCDS

This transcript is a member of the Human CCDS set: CCDS33502

Version

ENST00000252999.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000080014 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000252999.3 LAMA5-001

Summary