Transcript: ENST00000539485.1 ATP8B3-201

Description

ATPase, aminophospholipid transporter, class I, type 8B, member 3 [Source:HGNC Symbol;Acc:13535]

Gene Synonyms

ATP1K, ATPIK, FOS37502_2

Location

Chromosome 19: 1,782,076-1,812,270 reverse strand.

About this transcript

This transcript has 29 exons, is annotated with 39 domains and features, is associated with 17737 variant alleles and maps to 808 oligo probes.

Gene

This transcript is a product of gene ENSG00000130270.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310127.6	ATP8B3-002	5095	1300aa	ENSP00000311336.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45901	O60423	NM_138813.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539485.1	ATP8B3-201	5118	1310aa	ENSP00000443574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O60423	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525591.1	ATP8B3-005	4014	1263aa	ENSP00000437115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54196	O60423	NM_001178002.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526092.2	ATP8B3-001	2740	562aa	ENSP00000445204.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3R9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587160.2	ATP8B3-009	933	205aa	ENSP00000465027.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533993.2	ATP8B3-004	882	294aa	ENSP00000445883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000531925.1	ATP8B3-003	5237	86aa	ENSP00000444334.1	Nonsense mediated decay		F5GZM8	-	-
ENST00000526847.1	ATP8B3-008	887	38aa	ENSP00000439993.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533107.1	ATP8B3-007	2187	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 28, Transcript length: 5,118 bps, Translation length: 1,310 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60423

Version

ENST00000539485.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Stop codons

This transcript has a variant, rs60482625, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000539485.1 ATP8B3-201

Summary