Transcript: ENST00000475779.1 SMO-004

Description

smoothened, frizzled family receptor [Source:HGNC Symbol;Acc:11119]

Gene Synonyms

FZD11, Gx, SMOH

Location

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 2545 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000249373.3	SMO-001	3738	787aa	ENSP00000249373.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5811	A4D1K5 Q99835	NM_005631.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462420.1	SMO-003	789	151aa	ENSP00000418720.1	Nonsense mediated decay		H7C509	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475779.1	SMO-004	582	70aa	ENSP00000420749.1	Nonsense mediated decay		H7C5S9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000495998.1	SMO-002	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 582 bps, Translation length: 70 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000475779.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000350989 (version 1)