Transcript: ENST00000483546.1 RPP40-003

Description

ribonuclease P/MRP 40kDa subunit [Source:HGNC Symbol;Acc:20992]

Gene Synonyms

RNASEP1, bA428J1.3

Location

Chromosome 6: 5,002,010-5,004,297 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1253 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSG00000124787.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380051.2	RPP40-001	1483	363aa	ENSP00000369391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34333	O75818	NM_006638.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319533.5	RPP40-002	1088	340aa	ENSP00000317998.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69040	O75818	NM_001286132.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464646.1	RPP40-006	1042	303aa	ENSP00000419431.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479782.1	RPP40-005	500	113aa	ENSP00000418874.1	Nonsense mediated decay		F8WC38	-	-
ENST00000483546.1	RPP40-003	654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468105.1	RPP40-004	632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 654 bps,

Version

ENST00000483546.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000352891 (version 1)

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Transcript: ENST00000483546.1 RPP40-003

Summary