Description
collagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:17025]
Gene Synonyms
COL1AL, COLA1L, dJ682J15.1, dJ708F5.1
Location
Chromosome 6: 55,933,568-55,942,371 reverse strand.
About this transcript
This transcript has 5 exons, is associated with 3718 variant alleles and maps to 94 oligo probes.
Gene
This transcript is a product of gene ENSG00000124749.12 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000244728.5 | COL21A1-001 | 4339 | 957aa | ENSP00000244728.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55025 | A6PVD9 Q96P44 | NM_030820.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000535941.1 | COL21A1-202 | 4172 | 957aa | ENSP00000444384.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6PVD9 F5GZK2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000370819.1 | COL21A1-002 | 4094 | 954aa | ENSP00000359855.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6PVD9 Q96P44 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000370808.2 | COL21A1-201 | 2038 | 323aa | ENSP00000359844.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q96P44 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000370817.3 | COL21A1-005 | 624 | 136aa | ENSP00000359853.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6PVD9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000456983.1 | COL21A1-003 | 480 | 125aa | ENSP00000390958.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000488912.1 | COL21A1-010 | 2327 | 79aa | ENSP00000433624.1 | Nonsense mediated decay | H0YDH6 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000467045.1 | COL21A1-006 | 2291 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000469682.1 | COL21A1-007 | 778 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000484987.1 | COL21A1-008 | 598 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000467216.2 | COL21A1-009 | 277 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000482933.1 | COL21A1-011 | 1413 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461489.1 | COL21A1-004 | 555 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |