Transcript: ENST00000589614.1 TREM1-007

Description

triggering receptor expressed on myeloid cells 1 [Source:HGNC Symbol;Acc:17760]

Gene Synonyms

CD354, TREM-1

Location

Chromosome 6: 41,235,664-41,254,403 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 8231 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000124731.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000244709.4	TREM1-001	1690	234aa	ENSP00000244709.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4854	Q38L15 Q9NP99	NM_018643.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591620.1	TREM1-003	2048	225aa	ENSP00000465345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59499	K7EJW1	NM_001242589.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334475.6	TREM1-002	1043	150aa	ENSP00000334284.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56427	Q9NP99	NM_001242590.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589614.1	TREM1-007	772	250aa	ENSP00000465688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKM5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589882.1	TREM1-004	1876	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586287.1	TREM1-005	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589695.1	TREM1-006	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 772 bps, Translation length: 250 residues

Version

ENST00000589614.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000458281 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000589614.1 TREM1-007

Summary