Transcript: ENST00000378308.2 USP9X-001

Description

ubiquitin specific peptidase 9, X-linked [Source:HGNC Symbol;Acc:12632]

Gene Synonyms

DFFRX, FAF, FAM, RP5-1172N10.4, USP9

Location

Chromosome X: 40,944,888-41,091,850 forward strand.

About this transcript

This transcript has 45 exons, is annotated with 25 domains and features, is associated with 48012 variant alleles and maps to 1285 oligo probes.

Gene

This transcript is a product of gene ENSG00000124486.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324545.8	USP9X-003	12401	2570aa	ENSP00000316357.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43930	Q93008	NM_001039591.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378308.2	USP9X-001	8371	2554aa	ENSP00000367558.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55403	D3DWB6 Q86X58 Q93008	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462850.1	USP9X-009	548	46aa	ENSP00000420570.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000485180.1	USP9X-010	757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467173.1	USP9X-002	669	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463829.1	USP9X-007	666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487625.1	USP9X-004	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465386.1	USP9X-008	479	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 45, Coding exons: 44, Transcript length: 8,371 bps, Translation length: 2,554 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q93008

CCDS

This transcript is a member of the Human CCDS set: CCDS55403

Version

ENST00000378308.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000056248 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000378308.2 USP9X-001

Summary