Transcript: ENST00000593085.1 PEPD-011

Description

peptidase D [Source:HGNC Symbol;Acc:8840]

Gene Synonyms

PRD, PROLIDASE

Location

Chromosome 19: 33,877,856-33,880,026 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1196 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSG00000124299.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000244137.7	PEPD-001	1910	493aa	ENSP00000244137.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42544	K7EQ51 P12955	NM_000285.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397032.4	PEPD-002	1754	452aa	ENSP00000380226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54245	P12955	NM_001166056.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436370.3	PEPD-003	1638	429aa	ENSP00000391890.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54244	P12955	NM_001166057.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588328.1	PEPD-009	581	194aa	ENSP00000468516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000609145.1	PEPD-014	570	104aa	ENSP00000476514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590755.2	PEPD-015	547	55aa	ENSP00000476667.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590408.1	PEPD-012	433	42aa	ENSP00000476869.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591968.1	PEPD-013	943	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589598.1	PEPD-010	596	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590731.1	PEPD-008	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588719.1	PEPD-007	484	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593085.1	PEPD-011	1763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593163.1	PEPD-005	1045	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,763 bps,

Version

ENST00000593085.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451429 (version 1)

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Transcript: ENST00000593085.1 PEPD-011

Summary