Transcript: ENST00000244049.3 CDH26-006

Description

cadherin 26 [Source:HGNC Symbol;Acc:15902]

Gene Synonyms

VR20

Location

Chromosome 20: 58,571,419-58,589,134 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 7487 variant alleles and maps to 301 oligo probes.

Gene

This transcript is a product of gene ENSG00000124215.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000348616.4	CDH26-001	3182	832aa	ENSP00000339390.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13485	Q8IXH8	NM_177980.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000244047.5	CDH26-201	2870	852aa	ENSP00000244047.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IXH8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350849.6	CDH26-004	2494	165aa	ENSP00000310845.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13486	Q8IXH8	NM_021810.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000244049.3	CDH26-006	1931	124aa	ENSP00000244049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IXH8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370991.3	CDH26-003	1669	444aa	ENSP00000360030.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000456106.1	CDH26-002	418	80aa	ENSP00000407939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NTY2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000497614.1	CDH26-007	1429	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477058.1	CDH26-005	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,931 bps, Translation length: 124 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IXH8

Version

ENST00000244049.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000079938 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000244049.3 CDH26-006

Summary