Transcript: ENST00000548855.1 PDE1B-002

Description

phosphodiesterase 1B, calmodulin-dependent [Source:HGNC Symbol;Acc:8775]

Gene Synonyms

PDE1B1, PDES1B

Location

Chromosome 12: 54,943,408-54,968,758 forward strand.

About this transcript

This transcript has 9 exons, is associated with 10634 variant alleles and maps to 306 oligo probes.

Gene

This transcript is a product of gene ENSG00000123360.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000243052.3	PDE1B-001	3444	536aa	ENSP00000243052.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8882	B3KX78 B4DK72 Q01064 Q7Z364	NM_001288769.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550620.1	PDE1B-005	2150	516aa	ENSP00000448519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53800	B3KX78 B4DK72 Q01064 Q7Z364	NM_001165975.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538346.1	PDE1B-004	1711	495aa	ENSP00000442559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KX78 B4DK72 Q7Z364	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550285.1	PDE1B-003	2209	191aa	ENSP00000447354.1	Nonsense mediated decay		F8VZK3	-	-
ENST00000394277.3	PDE1B-006	2992	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542335.1	PDE1B-007	2782	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548855.1	PDE1B-002	4734	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552774.1	PDE1B-008	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 4,734 bps,

Version

ENST00000548855.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406204 (version 1)

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Transcript: ENST00000548855.1 PDE1B-002

Summary