Transcript: ENST00000338325.1 CSMD2-004

Description

CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:19290]

Gene Synonyms

KIAA1884, dJ1007G16.1, dJ1007G16.2, dJ947L8.1

Location

Chromosome 1: 34,237,709-34,279,820 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 17967 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSG00000121904.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373381.4	CSMD2-201	13684	3631aa	ENSP00000362479.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60082	E7EUA6	NM_052896.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373380.1	CSMD2-002	4379	1167aa	ENSP00000362478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z408	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373388.2	CSMD2-202	3824	426aa	ENSP00000362486.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T6B5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373377.1	CSMD2-003	3212	426aa	ENSP00000362475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T6B5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338325.1	CSMD2-004	1544	225aa	ENSP00000340311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TAH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000241312.4	CSMD2-001	13108	3487aa	ENSP00000241312.4	Nonsense mediated decay	CCDS380	Q7Z408	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000489419.1	CSMD2-005	2431	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465819.1	CSMD2-006	749	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471438.2	CSMD2-007	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 1,544 bps, Translation length: 225 residues

Version

ENST00000338325.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000036404 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000338325.1 CSMD2-004

Summary